TOC for Modware
BioseqBio::SeqI implementing Object that queries a sequence in Chado instead of in memory.
ChromosomeSimple front end class to search and create Modware::Feature::CHROMOSOME objects.
ConstantRetrieves and caches commonly used ids and records from the database.
DBHGlobal database connection object. Use for commits, rollbacks, custom SQL.
FeatureBase class for all Modware::Feature::* classes. Probably the most important class in Modware!
GeneConvienent class to retrieve Modware::Feature::GENE objects.
Has_synonymsMixin class, provides accessor methods for classes tha have synonyms.
IteratorAn Iterator parent class inherited by the results returned from Modware::Search::* methods.
Protein_infoResults of many calculations based on protein sequence.
RootBase class, provides common error handling methods.